Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions.
It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.
Powerful utility designed for building gene networks
Arabidopsis Motif Scanner, as its name suggests, allows you to analyze the genome of the “Arabidopsis thaliana” plant, and it provides you with a comprehensive database that includes annotations and gene interactions for each result.
Moreover, it makes it possible to combine the extracted information with NGS and DNA Chip Array results in order to discover new gene relations and functions.
Furthermore, Arabidopsis Motif Scanner uses DNA-protein and protein-protein interaction data to help you identify metabolic pathways regulated by specific transcription factors.
User-friendly interface that features a tabbed layout
Upon launch, the application loads the database and displays the Motif Scanner tab. Here, you can perform searches based on a number of parameters, as well as filter the results.
The Expression tab enables you to combine cis-acting element positions with NFS or DNA Chip Array expression data. You can change the Fold Change Threshold, filter the results and export all the entries or just the selected ones.
You can view the gene organization in the Gene Viewer tab either by clicking on the AGI code box in the Motif Scanner tab or by inserting the code in the specified field.
Lastly, after clicking and of the EC or Interactions cells in the Motif Scanner tab, you can view the resulting data in a tree view within the Interactions tab.
Specialized tool that comes with extensive documentation
Even though the application is clearly targeted at experienced researchers, it is worth noting that a comprehensive user manual is available online. Because of this, it should not take very long for first-time users to get the hang of things and start taking advantage of this helpful research tool.
In conclusion, Arabidopsis Motif Scanner is a powerful software solution that allows you to correlate cis-acting element position information with NGS or DNA Chip Array expression data, making it possible to discover new gene relations and functions.

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Arabidopsis Motif Scanner was designed to help researchers analyze the genome of the “Arabidopsis thaliana” plant, and it provides you with a comprehensive database that includes annotations and gene relations for each result. It allows you to combine the extracted information with NGS and DNA Chip Array results in order to discover new gene relations and functions. The application consists of 3 main sections: tools, Interactions and Gene Viewer. The tools section has 2 sub-sections: Biology and Data.
Arabidopsis thaliana is a unicellular flowering plant of the Brassicaceae (Cruciferae) family and is also used as a model organism in developmental biology and genetics. The gene relations and functions database includes gene expression information from NGS and DNA Chip Array results and covers data extracted from other publications. Biological data includes gene expression values, protein interactions and metabolic pathways. Additionally, it includes the position of cis-acting elements in the gene sequence, as well as the color code that indicates the influence of the cis-acting element on the expression of the gene.
Arabidopsis Motif Scanner has numerous filters and parameters that enable you to control the way the data is displayed in the search results, as well as how to combine the results. Additionally, the Data Viewer allows you to view the result of the database search and visualization by splitting the data into biological and data columns, as well as sorting the data, so that it can be presented in a tree view and view the gene organization. To perform a search in Arabidopsis Motif Scanner, you can follow the three steps below:
Step 1: Extract a gene list from the database.
Step 2: Click the Tools tab, either Biology or Data tab.
Step 3: Fill in the fields based on the search parameters and click the search button.
How to use the application
Step 1: Extract a gene list from the database.
Click the Tools tab, either Biology or Data tab, and select the gene list.
Step 2: Click the Tools tab, either Biology or Data tab.
Step 3: Fill in the fields based on the search parameters and click the search button.
Step 4: Follow the instructions in the Arabidopsis Motif Scanner user guide to view the data.
Arabidopsis thaliana cis-acting elements are often present at the 5’ and 3’ end of the genes and contain information about their gene regulation.
The cis-acting element database

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Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions. It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.

Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions. It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.Arabidopsis Motif Scanner Description:Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions. It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.

This product can be installed on computers running Microsoft Windows operating systems. It can also be used on computers running macOS.

Arabidopsis Motif Scanner Description
Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions. It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.
Powerful utility designed for building gene networks
Arabidopsis Motif Scanner, as its name suggests, allows you to analyze the genome of the “Arabidopsis thaliana” plant, and it provides you with a comprehensive database that includes annotations and gene interactions for each result.
Moreover, it makes it possible to combine the extracted information with NGS and DNA Chip Array results in order to discover new gene relations and functions.
Furthermore, Arabidopsis Motif Scanner uses DNA-protein and protein-protein interaction data to help you identify metabolic pathways regulated by specific transcription factors.
User-friendly interface that features a tabbed layout
Upon launch, the application loads the database and displays the Motif Scanner tab. Here, you can perform searches based on a
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Arabidopsis Motif Scanner With Key

Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions.
It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.
Powerful utility designed for building gene networks
Arabidopsis Motif Scanner, as its name suggests, allows you to analyze the genome of the “Arabidopsis thaliana” plant, and it provides you with a comprehensive database that includes annotations and gene interactions for each result.
Moreover, it makes it possible to combine the extracted information with NGS and DNA Chip Array results in order to discover new gene relations and functions.
Furthermore, Arabidopsis Motif Scanner uses DNA-protein and protein-protein interaction data to help you identify metabolic pathways regulated by specific transcription factors.
User-friendly interface that features a tabbed layout
Upon launch, the application loads the database and displays the Motif Scanner tab. Here, you can perform searches based on a number of parameters, as well as filter the results.
The Expression tab enables you to combine cis-acting element positions with NFS or DNA Chip Array expression data. You can change the Fold Change Threshold, filter the results and export all the entries or just the selected ones.
You can view the gene organization in the Gene Viewer tab either by clicking on the AGI code box in the Motif Scanner tab or by inserting the code in the specified field.
Lastly, after clicking and of the EC or Interactions cells in the Motif Scanner tab, you can view the resulting data in a tree view within the Interactions tab.
Specialized tool that comes with extensive documentation
Even though the application is clearly targeted at experienced researchers, it is worth noting that a comprehensive user manual is available online. Because of this, it should not take very long for first-time users to get the hang of things and start taking advantage of this helpful research tool.
In conclusion, Arabidopsis Motif Scanner is a powerful software solution that allows you to correlate cis-acting element position information with NGS or DNA Chip Array expression data, making it possible to discover new gene relations and functions.

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What’s New in the Arabidopsis Motif Scanner?

Arabidopsis Motif Scanner is a specialized application created to help researchers analyze gene relations and functions.
It enables you to pinpoint the position of cis-regulatory elements in the “Arabidopsis thaliana” plant commonly used as a model organism in biology and genetics, as well as combine this information with other data to identify gene networks regulated by transcription factors.
Powerful utility designed for building gene networks
Arabidopsis Motif Scanner, as its name suggests, allows you to analyze the genome of the “Arabidopsis thaliana” plant, and it provides you with a comprehensive database that includes annotations and gene interactions for each result.
Moreover, it makes it possible to combine the extracted information with NGS and DNA Chip Array results in order to discover new gene relations and functions.
Furthermore, Arabidopsis Motif Scanner uses DNA-protein and protein-protein interaction data to help you identify metabolic pathways regulated by specific transcription factors.
User-friendly interface that features a tabbed layout
Upon launch, the application loads the database and displays the Motif Scanner tab. Here, you can perform searches based on a number of parameters, as well as filter the results.
The Expression tab enables you to combine cis-acting element positions with NFS or DNA Chip Array expression data. You can change the Fold Change Threshold, filter the results and export all the entries or just the selected ones.
You can view the gene organization in the Gene Viewer tab either by clicking on the AGI code box in the Motif Scanner tab or by inserting the code in the specified field.
Lastly, after clicking and of the EC or Interactions cells in the Motif Scanner tab, you can view the resulting data in a tree view within the Interactions tab.
Specialized tool that comes with extensive documentation
Even though the application is clearly targeted at experienced researchers, it is worth noting that a comprehensive user manual is available online. Because of this, it should not take very long for first-time users to get the hang of things and start taking advantage of this helpful research tool.
Advantages of using Arabidopsis Motif Scanner:
• It is a specialized software application that is geared towards the Arabidopsis model plant
• It contains extensive tutorials that enable you to get started using the tool
• It contains a comprehensive database containing annotations and gene interactions
• It allows you to analyze the genome of the Arabidopsis model plant

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System Requirements For Arabidopsis Motif Scanner:

Minimum:
OS: Windows XP Service Pack 3 or later
Processor: Intel Core 2 Duo or faster
Memory: 1 GB
Graphics: NVIDIA GeForce 8600M GS or ATI Radeon HD 4870 or better
DirectX: Version 9.0c
Network: Broadband Internet connection
Storage: 16 GB available space
Sound Card: DirectX 9.0c Compatible sound card
Additional Notes: If you plan to use any stereoscopic 3D, you must have a dual-head display.
Additional Notes:

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